mirror of
https://github.com/tldr-pages/tldr.git
synced 2024-10-28 15:19:43 +01:00
546 B
546 B
treetime
TreeTime provides routines for ancestral sequence reconstruction and inference of molecular-clock phylogenies. More information: https://treetime.readthedocs.io/en/latest/tutorials.html.
- Infer ancestral sequences maximizing the joint or marginal likelihood:
treetime ancestral
- Analyze patterns of recurrent mutations aka homoplasies:
treetime homoplasy
- Estimate molecular clock parameters and reroot the tree:
treetime clock
- Map discrete character such as host or country to the tree:
treetime mugration